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Филогенетический анализ гена вируса гриппа, кодирующего неструктурные белки
УДК:
578.832.1
Автор статьи:
Богоявленский А.П.
Место работы автора:
Институт микробиологии и вирусологии
Название журнала:
Биотехнология. Теория и практика
Год выпуска:
2010
Номер журнала:
3
Страницы:
с.89-96
Резюме на казахском языке:
Мақалада грипп вирусының кодталатын құрылымдық емес белоктарының геніне филогенентикалық анализі берілген. Грипп вирусының құрылымдық емес белоктарыныңэволюциялық өзгергіштік механизмі талқыланған.
Резюме на английском языке:
Avian influenza virus infects birds and mammals throughout the world and has the possibility to cause outbreaks in future. To assess the evolutionary characteristics of NS proteins influenza strains isolated from wild birds and mammals we investigated the phylogenetic relationships among 126 viruses from GenBank.
Список литературы:
1. Hale, RandallR.E., Ortin J., Jackson D. The multifunctional NS1 protein of influenza A viruses // Joural of General Virology. - 2008. - v. 89. - P. 2359-2376.
2. Lin D., Lan J., Zhang Z. Structure and function of the NS1 protein of influenza A virus // Acta Biochimica et biophysica Sinica, 2007, v. 39, №3, p. 155-163.
3. Noach D., Krug R. Influenza virus virulence and its molecular determinants // Adv. Virus Res. - 2005. - v. 65. - P. 121-145.
4. Lamb R.A., Choppin P.W: Segment 8 of the Influenza Virus Genome is Unique in Coding for Two Polypeptides // Proc Natl Acad Sci USA. - 1979. - v. 76. - P. 4908-4912.
5. Webster R.G., Bean W.J., Gorman O.T., Chambers T.M., Kawaoka Y. Evolution and ecology of influenza A viruses // Microbiol. Rev. - 1992. - v. 56, N 1. - P. 152-179.
6. Obenauer J.C., Denson J., Mehta P.K. et al.: Large-Scale Sequence Analysis of Avian Influenza Isolates // Science. - 2006. - v. 311. - P. 1576-1580.
7. Bao Y., P. Bolotov, D. Dernovoy, B. Kiryutin, L. Zaslavsky, T. Tatusova, J.Ostell, and D. Lipman. The Influenza Virus Resource at the National Center for Biotechnology Information // J. Virol. - 2008. - v. 82, N 2. - P. 596-601.
8. Needleman S.B., Wunsch C.D. A general method applicable to the search for similarities in the amino acid sequence of two proteins // J. Mol. Biol. - 1970. - v.48. - P. 443-453.
9. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 // Molecular Biology and Evolution. - 2007. - v. 24. - P. 1596-1599.
10. Tamura K., Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees // Mol.Biol.Evol. - 2007. - v. 10. - P. 512-526.
11. Zharkikh A., Li W.H. Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences: I. Four taxa with a molecular clock // Mol.Biol.Evol. - 1992. - v. 9. - P. 1119-1147.
12. Zharkikh A., Li W.H. Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences: II. Four taxa without a molecular clock // J Mol. Evol. - 1992. - v. 35. - P. 356-366.
13. Zharkikh A., Li W.H. Estimation of confidence in phylogeny: the complete-and-partial bootstrap technique // Mol. Phylogenet. Evol. - 1995. - v. 4. - P. 44-63.
14. Treanor J.J., Snyder M.H., London W.T., Murphy B.R. The B allele of the NS gene of avian influenza viruses, but not the A allele, attenuates a human influenza a virus for squirrel monkeys // Virology. - 1989. - v. 171. - P. 1-9.
15. Suarez D.L., Perdue M.L. Multiple alignment comparison of the non-structural genes of influenza A viruses// Virus Research. - 1998. - v. 54. - P. 59-69.
16. Seo S.H., Hoffmann E., Webster R.G. The NS1 gene of H5N1 influenza viruses circumvents the hostanti-viral cytokine responses // Virus Res. - 2004. - v. 103. - P.107-113.
17. Li Z., Jiang Y., Jiao P., Wang A., Zhao F., Tian G., Wang X., Yu K., Bu Z., Chen H. The NS1 GeneContributes to the Virulence of H5N1 Avian Influenza Viruses // J. Virol. - 2006. - v. 80. - P. 11115-11123.
1. Hale, RandallR.E., Ortin J., Jackson D. The multifunctional NS1 protein of influenza A viruses // Joural of General Virology. - 2008. - v. 89. - P. 2359-2376.
2. Lin D., Lan J., Zhang Z. Structure and function of the NS1 protein of influenza A virus // Acta Biochimica et biophysica Sinica, 2007, v. 39, №3, p. 155-163.
3. Noach D., Krug R. Influenza virus virulence and its molecular determinants // Adv. Virus Res. - 2005. - v. 65. - P. 121-145.
4. Lamb R.A., Choppin P.W: Segment 8 of the Influenza Virus Genome is Unique in Coding for Two Polypeptides // Proc Natl Acad Sci USA. - 1979. - v. 76. - P. 4908-4912.
5. Webster R.G., Bean W.J., Gorman O.T., Chambers T.M., Kawaoka Y. Evolution and ecology of influenza A viruses // Microbiol. Rev. - 1992. - v. 56, N 1. - P. 152-179.
6. Obenauer J.C., Denson J., Mehta P.K. et al.: Large-Scale Sequence Analysis of Avian Influenza Isolates // Science. - 2006. - v. 311. - P. 1576-1580.
7. Bao Y., P. Bolotov, D. Dernovoy, B. Kiryutin, L. Zaslavsky, T. Tatusova, J.Ostell, and D. Lipman. The Influenza Virus Resource at the National Center for Biotechnology Information // J. Virol. - 2008. - v. 82, N 2. - P. 596-601.
8. Needleman S.B., Wunsch C.D. A general method applicable to the search for similarities in the amino acid sequence of two proteins // J. Mol. Biol. - 1970. - v.48. - P. 443-453.
9. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 // Molecular Biology and Evolution. - 2007. - v. 24. - P. 1596-1599.
10. Tamura K., Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees // Mol.Biol.Evol. - 2007. - v. 10. - P. 512-526.
11. Zharkikh A., Li W.H. Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences: I. Four taxa with a molecular clock // Mol.Biol.Evol. - 1992. - v. 9. - P. 1119-1147.
12. Zharkikh A., Li W.H. Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences: II. Four taxa without a molecular clock // J Mol. Evol. - 1992. - v. 35. - P. 356-366.
13. Zharkikh A., Li W.H. Estimation of confidence in phylogeny: the complete-and-partial bootstrap technique // Mol. Phylogenet. Evol. - 1995. - v. 4. - P. 44-63.
14. Treanor J.J., Snyder M.H., London W.T., Murphy B.R. The B allele of the NS gene of avian influenza viruses, but not the A allele, attenuates a human influenza a virus for squirrel monkeys // Virology. - 1989. - v. 171. - P. 1-9.
15. Suarez D.L., Perdue M.L. Multiple alignment comparison of the non-structural genes of influenza A viruses// Virus Research. - 1998. - v. 54. - P. 59-69.
16. Seo S.H., Hoffmann E., Webster R.G. The NS1 gene of H5N1 influenza viruses circumvents the hostanti-viral cytokine responses // Virus Res. - 2004. - v. 103. - P.107-113.
17. Li Z., Jiang Y., Jiao P., Wang A., Zhao F., Tian G., Wang X., Yu K., Bu Z., Chen H. The NS1 GeneContributes to the Virulence of H5N1 Avian Influenza Viruses // J. Virol. - 2006. - v. 80. - P. 11115-11123.
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В обзоре представлен филогенетический анализ гена, кодирующего неструктурные белки вируса гриппа.Обсуждаются механизмы эволюционной изменчивости неструктурных белков вируса гриппа.
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